WABI 2017 Accepted Papers

• Anton Polishko, Md Abid Hasan, Weihua Pan, Evelien Bunnik, Karine Le Roch and Stefano Lonardi.
  ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks
• Nadia El-Mabrouk and Aida Ouangraoua.
  A general framework for gene tree correction
• Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis and Dimitris Polychronopoulos.
  Optimal Computation of Overabundant Words
• Anastasiia Abramova and Anton Korobeynikov.
  Assessing the Significance of Peptide Spectrum Match Scores
• Md. Shamsuzzoha Bayzid and Tandy Warnow.
  Gene Tree Parsimony for Incomplete Gene Trees
• Sarah Christensen, Erin Molloy, Pranjal Vachaspati and Tandy Warnow.
  Optimal Completion of Incomplete Gene Trees in Polynomial Time
• Petr Prochazka and Jan Holub.
  Byte-Aligned Pattern Matching in Compressed Genomic Sequences
• Jens Quedenfeld and Sven Rahmann.
  Analysis of min-hashing for variant tolerant DNA read mapping
• Pijus Simonaitis and Krister Swenson.
  Finding local genome rearrangements
• Bahar Alipanahi, Leena Salmela, Simon Puglisi, Martin Muggli and Christina Boucher.
  Disentangled Long-Read De Bruijn Graphs via Optical Maps
• Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke and Marc Hellmuth.
  Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps
• Yves Frank, Tomas Hruz, Thomas Tschager and Valentin Venzin.
  Improved De Novo Peptide Sequencing using LC Retention Time Information
• Maxime Crochemore, Alexandre P Francisco, Solon P Pissis and Cátia Vaz.
  Towards distance-based phylogenetic inference in average-case linear-time
• Michał Ciach, Anna Muszewska and Paweł Górecki.
  Detecting Locus Acquisition Events in Gene Trees
• Hosna Jabbari, Ian Wark, Carlo Montemagno and Sebastian Will.
  Sparsification enables predicting kissing hairpin pseudoknot structures of long RNAs in practice
• Abbas Roayaei Ardakany and Stefano Lonardi.
  Efficient and Accurate Detection of Topologically Associating Domains from Contact Maps
• Jongkyu Kim and Knut Reinert.
  Vaquita: Fast and Accurate Identification of Structural Variation using Combined Evidence
• Samuele Girotto, Matteo Comin and Cinzia Pizzi.
  Fast Spaced Seed Hashing
• Jarkko Toivonen, Esko Ukkonen and Jussi Taipale.
  Seed-driven Learning of Position Weight Matrices from Large Sequence Sets
• Shunfu Mao, Kannan Ramachandran, David Tse, Soheil Mohajer and Sreeram Kannan.
  abSNP: RNA-Seq SNP Calling in Repetitive Regions via Abundance Estimation
• Sarvesh Nikumbh, Peter Ebert and Nico Pfeifer.
  All fingers are not the same: Handling variable-length sequences in a discriminative setting using conformal multi-instance kernels
• Chenyue Hu, Hanyang Li and Amina Qutub.
  Shrinkage Clustering: a fast and size-constrained algorithm for biomedical applications
• Brian Brubach, Jay Ghurye, Aravind Srinivasan and Mihai Pop.
  Better Greedy Sequence Clustering with Fast Banded Alignment
• Nidhi Shah, Stephen Altschul and Mihai Pop.
  Outlier detection in BLAST hits
• Amir Bayegan and Peter Clote.
  An IP algorithm for RNA folding trajectories
• Fatemeh Almodaresi, Prashant Pandey and Rob Patro.
  Rainbowfish: A Succinct Colored de Bruijn Graph Representation
• Mohamed Gunady, Steffen Cornwell, Stephen Mount and Hector Bravo.
  Yanagi: Transcript Segment Library Construction for RNA-Seq Quantification